1) List of the proteins with a charge periodicity
of 28 residues (PCP28) and the proteins with broad positive correlation of
charges (PBPCC) for H. sapiens, A. thaliana and B. subtilis according to Swiss-prot.
|
|
Number of ORFs (size>100aa) |
PCP28 |
PBPCC |
|
14720 |
381 |
1371 |
|
|
6562 |
1 |
385 |
|
|
4254 |
0 |
72 |
2) List of the numbers
of PCP28 and PBPCC for 303 biological organisms according to genome database.
|
|
Number of ORFs (size>100aa) |
PCP28 |
PBPCC |
|
Mammalians (19) |
|
|
|
|
Homo_sapiens |
31828 |
586 |
3235 |
|
Pan_troglodytes |
32498 |
678 |
3600 |
|
Sus_scrofa |
23421 |
166 |
2214 |
|
R_norvegicus |
28287 |
264 |
3262 |
|
Bos_taurus |
32399 |
381 |
3511 |
|
Ailuropoda_melanoleuca |
18563 |
179 |
1791 |
|
Canis_lupus_familiaris |
21177 |
211 |
2313 |
|
Loxodonta_africana |
19458 |
222 |
1929 |
|
Equus_caballus |
20158 |
231 |
1952 |
|
Cavia_porcellus |
19589 |
224 |
1899 |
|
M_musculus |
28592 |
419 |
3044 |
|
Macaca_mulatta |
27212 |
435 |
3081 |
|
Nomascus_leucogenys |
27893 |
532 |
3011 |
|
Oryctolagus_cuniculus |
17109 |
144 |
1847 |
|
Cricetulus_griseus |
20919 |
214 |
1938 |
|
Monodelphis_domestica |
18739 |
371 |
1757 |
|
Pongo_abelii |
27171 |
451 |
3024 |
|
Callithrix_jacchus |
22499 |
238 |
2643 |
|
Ornithorhynchus_anatinus |
16036 |
37 |
1382 |
|
|
|
|
|
|
Other vertebrates (8) |
|
|
|
|
Branchiostoma_floridae |
27367 |
592 |
2662 |
|
Danio_rerio |
25952 |
565 |
2693 |
|
Oreochromis_niloticus |
22473 |
83 |
2098 |
|
Gallus_gallus |
16445 |
30 |
2003 |
|
Meleagris_gallopavo |
12111 |
13 |
1087 |
|
Xenopus_Silurana_tropicalis |
21767 |
139 |
1980 |
|
Taeniopygia_guttata |
13715 |
68 |
1374 |
|
Anolis_carolinensis |
16075 |
306 |
1488 |
|
|
|
|
|
|
Other eukaryotes (28) |
|
|
|
|
Acyrthosiphon_pisum |
16238 |
88 |
1525 |
|
Aedes_aegypti |
15833 |
16 |
1876 |
|
Anopheles_gambiae_str._PEST |
13500 |
10 |
1614 |
|
Amphimedon_queenslandica |
9491 |
0 |
759 |
|
Apis_mellifera |
9760 |
8 |
1044 |
|
Bombus_impatiens |
10165 |
7 |
1033 |
|
Bombus_terrestris |
10034 |
8 |
1016 |
|
Brugia_malayi |
9807 |
24 |
812 |
|
Caenorhabditis_elegans |
22511 |
0 |
1577 |
|
Hydra_magnipapillata |
16396 |
4 |
1396 |
|
Drosophila_melanogaster |
21476 |
27 |
2878 |
|
Drosophila_pseudoobscura_pseudoobscura |
14679 |
7 |
1917 |
|
Ciona_intestinalis |
13462 |
13 |
1513 |
|
Nasonia_vitripennis |
12410 |
6 |
1263 |
|
Saccoglossus_kowalevskii |
12277 |
36 |
1548 |
|
Strongylocentrotus_purpuratus |
35848 |
15 |
4012 |
|
Tribolium_castaneum |
9650 |
18 |
826 |
|
Oryza_sativa_Japonica_Group |
25587 |
0 |
2497 |
|
Populus_trichocarpa |
35893 |
1 |
2349 |
|
Arabidopsis_thaliana |
32829 |
2 |
2563 |
|
Cryptosporidium_parvum |
3749 |
1 |
333 |
|
Dictyostelium_discoideum |
11752 |
1 |
1056 |
|
Leishmania_braziliensis |
7745 |
0 |
543 |
|
Plasmodium_falciparum |
5061 |
2 |
1292 |
|
Theileria_annulata |
3689 |
0 |
412 |
|
Trypanosoma_brucei |
8297 |
1 |
703 |
|
Saccharomyces_cerevisiae |
6069 |
0 |
657 |
|
Schizosaccharomyces_pombe |
4816 |
0 |
388 |
|
|
|
|
|
|
Archaea (22) |
|
|
|
|
Aeropyrum_pernix |
1752 |
0 |
75 |
|
Archaeoglobus_fulgidus |
2097 |
0 |
35 |
|
Haloarcula_marismortui_ATCC_43049 |
3615 |
0 |
741 |
|
Halobacterium_sp |
2236 |
0 |
367 |
|
Methanobacterium_thermoautotrophicum |
1643 |
0 |
52 |
|
Methanococcus_jannaschii |
1602 |
0 |
43 |
|
Methanococcus_maripaludis_S2 |
1548 |
0 |
55 |
|
Methanopyrus_kandleri |
1551 |
0 |
87 |
|
Methanosarcina_acetivorans |
3971 |
0 |
214 |
|
Methanosarcina_mazei |
2986 |
0 |
98 |
|
Nanoarchaeum_equitans |
487 |
0 |
19 |
|
Picrophilus_torridus_DSM_9790 |
1401 |
0 |
15 |
|
Pyrobaculum_aerophilum |
2138 |
0 |
24 |
|
Pyrococcus_abyssi |
1700 |
0 |
39 |
|
Pyrococcus_furiosus |
1845 |
0 |
66 |
|
Pyrococcus_horikoshii |
1742 |
0 |
49 |
|
Sulfolobus_acidocaldarius_DSM_639 |
1993 |
0 |
21 |
|
Sulfolobus_solfataricus |
2741 |
1 |
87 |
|
Sulfolobus_tokodaii |
2557 |
0 |
55 |
|
Thermococcus_kodakaraensis_KOD1 |
2006 |
0 |
51 |
|
Thermoplasma_acidophilum |
1372 |
0 |
15 |
|
Thermoplasma_volcanium |
1365 |
0 |
18 |
|
|
|
|
|
|
Eubacteria (226) |
|
|
|
|
Acinetobacter_sp_ADP1 |
3020 |
0 |
29 |
|
Agrobacterium_tumefaciens_C58_Cereon |
4855 |
0 |
80 |
|
Agrobacterium_tumefaciens_C58_UWash |
4905 |
0 |
98 |
|
Anaplasma_marginale_St_Maries |
877 |
0 |
36 |
|
Aquifex_aeolicus |
1518 |
0 |
43 |
|
Azoarcus_sp_EbN1 |
4093 |
0 |
223 |
|
Bacillus_anthracis_Ames |
4334 |
0 |
59 |
|
Bacillus_anthracis_Ames_0581 |
4515 |
0 |
67 |
|
Bacillus_anthracis_str_Sterne |
4590 |
0 |
64 |
|
Bacillus_cereus_ATCC_10987 |
4650 |
0 |
87 |
|
Bacillus_cereus_ATCC14579 |
4502 |
0 |
63 |
|
Bacillus_cereus_ZK |
4921 |
0 |
81 |
|
Bacillus_clausii_KSM-K16 |
3766 |
0 |
203 |
|
Bacillus_halodurans |
3554 |
0 |
238 |
|
Bacillus_licheniformis_ATCC_14580 |
3630 |
0 |
69 |
|
Bacillus_licheniformis_DSM_13 |
3675 |
0 |
73 |
|
Bacillus_subtilis |
3623 |
0 |
75 |
|
Bacillus_thuringiensis_konkukian |
4621 |
0 |
86 |
|
Bacteroides_fragilis_NCTC_9434 |
3868 |
0 |
55 |
|
Bacteroides_fragilis_YCH46 |
4024 |
0 |
64 |
|
Bacteroides_thetaiotaomicron_VPI-5482 |
4479 |
0 |
90 |
|
Bartonella_henselae_Houston-1 |
1306 |
0 |
51 |
|
Bartonella_quintana_Toulouse |
1060 |
0 |
36 |
|
Bdellovibrio_bacteriovorus |
3332 |
0 |
52 |
|
Bifidobacterium_longum |
1642 |
0 |
80 |
|
Blochmannia_floridanus |
548 |
0 |
35 |
|
Bordetella_bronchiseptica |
4718 |
0 |
50 |
|
Bordetella_parapertussis |
3979 |
0 |
57 |
|
Bordetella_pertussis |
3253 |
0 |
269 |
|
Borrelia_burgdorferi |
1333 |
0 |
85 |
|
Borrelia_garinii_PBi |
838 |
0 |
39 |
|
Bradyrhizobium_japonicum |
7641 |
0 |
227 |
|
Brucella_abortus_9-941 |
2590 |
0 |
50 |
|
Brucella_melitensis |
2841 |
0 |
70 |
|
Brucella_suis_1330 |
2690 |
0 |
53 |
|
Buchnera_aphidicola |
466 |
0 |
91 |
|
Buchnera_aphidicola_Sg |
507 |
0 |
71 |
|
Buchnera_sp |
531 |
0 |
51 |
|
Burkholderia_mallei_ATCC_23344 |
4213 |
0 |
296 |
|
Burkholderia_pseudomallei_K96243 |
5332 |
0 |
97 |
|
Campylobacter_jejuni |
1483 |
0 |
32 |
|
Campylobacter_jejuni_RM1221 |
1592 |
0 |
39 |
|
Candidatus_Pelagibacter_ubique_HTCC1062 |
1242 |
0 |
139 |
|
Caulobacter_crescentus |
3453 |
0 |
95 |
|
Chlamydia_muridarum |
834 |
0 |
36 |
|
Chlamydia_trachomatis |
833 |
0 |
33 |
|
Chlamydophila_abortus_S26_3 |
877 |
0 |
40 |
|
Chlamydophila_caviae |
912 |
0 |
44 |
|
Chlamydophila_pneumoniae_AR39 |
961 |
0 |
40 |
|
Chlamydophila_pneumoniae_CWL029 |
966 |
0 |
41 |
|
Chlamydophila_pneumoniae_J138 |
979 |
0 |
42 |
|
Chlamydophila_pneumoniae_TW_183 |
974 |
0 |
41 |
|
Chlorobium_tepidum_TLS |
1768 |
0 |
29 |
|
Chromobacterium_violaceum |
4037 |
0 |
94 |
|
Clostridium_acetobutylicum |
3417 |
0 |
57 |
|
Clostridium_perfringens |
2458 |
0 |
49 |
|
Clostridium_tetani_E88 |
2429 |
0 |
56 |
|
Colwellia_psychrerythraea_34H |
4071 |
0 |
112 |
|
Corynebacterium_diphtheriae |
2024 |
0 |
65 |
|
Corynebacterium_efficiens_YS-314 |
2657 |
0 |
169 |
|
Corynebacterium_glutamicum_ATCC_13032_Bielefeld
|
2734 |
0 |
163 |
|
Corynebacterium_glutamicum_ATCC_13032_Kitasato
|
2740 |
0 |
162 |
|
Corynebacterium_jeikeium_K411 |
1979 |
0 |
104 |
|
Coxiella_burnetii |
1656 |
0 |
62 |
|
Dechloromonas_aromatica_RCB |
3885 |
0 |
41 |
|
Dehalococcoides_ethenogenes_195 |
1296 |
0 |
18 |
|
Deinococcus_radiodurans |
3000 |
0 |
89 |
|
Desulfotalea_psychrophila_LSv54 |
2890 |
0 |
98 |
|
Desulfovibrio_vulgaris_Hildenborough |
2943 |
0 |
56 |
|
Ehrlichia_ruminantium_Gardel |
849 |
0 |
37 |
|
Ehrlichia_ruminantium_str._Welgevonden |
851 |
0 |
34 |
|
Ehrlichia_ruminantium_Welgevonden |
837 |
0 |
35 |
|
Enterococcus_faecalis_V583 |
2783 |
0 |
75 |
|
Erwinia_carotovora_atroseptica_SCRI1043 |
4036 |
0 |
48 |
|
Escherichia_coli_CFT073 |
4472 |
0 |
130 |
|
Escherichia_coli_K12 |
3862 |
0 |
59 |
|
Escherichia_coli_O157H7 |
4595 |
0 |
86 |
|
Escherichia_coli_O157H7_EDL933 |
4611 |
0 |
74 |
|
Francisella_tularensis_tularensis |
1480 |
0 |
25 |
|
Fusobacterium_nucleatum |
1840 |
0 |
27 |
|
Geobacillus_kaustophilus_HTA426 |
3012 |
0 |
87 |
|
Geobacter_sulfurreducens |
3080 |
0 |
59 |
|
Gloeobacter_violaceus |
3947 |
0 |
79 |
|
Gluconobacter_oxydans_621H |
2498 |
0 |
59 |
|
Haemophilus_ducreyi_35000HP |
1410 |
0 |
34 |
|
Haemophilus_influenzae |
1523 |
0 |
29 |
|
Haemophilus_influenzae_86_028NP |
1623 |
0 |
35 |
|
Helicobacter_hepaticus |
1630 |
0 |
51 |
|
Helicobacter_pylori_26695 |
1401 |
0 |
57 |
|
Helicobacter_pylori_J99 |
1370 |
0 |
44 |
|
Idiomarina_loihiensis_L2TR |
2443 |
0 |
71 |
|
Lactobacillus_acidophilus_NCFM |
1653 |
0 |
82 |
|
Lactobacillus_johnsonii_NCC_533 |
1669 |
0 |
48 |
|
Lactobacillus_plantarum |
2762 |
0 |
90 |
|
Lactococcus_lactis |
2023 |
0 |
74 |
|
Legionella_pneumophila_Lens |
2672 |
0 |
57 |
|
Legionella_pneumophila_Paris |
2887 |
0 |
60 |
|
Legionella_pneumophila_Philadelphia_1 |
2740 |
0 |
67 |
|
Leifsonia_xyli_xyli_CTCB0 |
1785 |
0 |
57 |
|
Leptospira_interrogans_serovar_Copenhageni |
3271 |
0 |
109 |
|
Leptospira_interrogans_serovar_Lai |
3375 |
0 |
98 |
|
Listeria_innocua |
2743 |
0 |
67 |
|
Listeria_monocytogenes |
2609 |
0 |
68 |
|
Listeria_monocytogenes_4b_F2365 |
2529 |
0 |
65 |
|
Mannheimia_succiniciproducens_MBEL55E |
1965 |
0 |
37 |
|
Mesoplasma_florum_L1 |
635 |
0 |
28 |
|
Mesorhizobium_loti |
6468 |
0 |
123 |
|
Methylococcus_capsulatus_Bath |
2708 |
0 |
56 |
|
Mycobacterium_avium_paratuberculosis |
4164 |
0 |
139 |
|
Mycobacterium_bovis |
3617 |
0 |
112 |
|
Mycobacterium_leprae |
1456 |
0 |
37 |
|
Mycobacterium_tuberculosis_CDC1551 |
3636 |
0 |
135 |
|
Mycobacterium_tuberculosis_H37Rv |
3695 |
0 |
110 |
|
Mycoplasma_gallisepticum |
689 |
0 |
31 |
|
Mycoplasma_genitalium |
462 |
0 |
34 |
|
Mycoplasma_hyopneumoniae_232 |
626 |
0 |
35 |
|
Mycoplasma_hyopneumoniae_7448 |
619 |
0 |
37 |
|
Mycoplasma_hyopneumoniae_J |
615 |
0 |
37 |
|
Mycoplasma_mobile_163K |
594 |
0 |
21 |
|
Mycoplasma_mycoides |
890 |
0 |
44 |
|
Mycoplasma_penetrans |
960 |
0 |
48 |
|
Mycoplasma_pneumoniae |
663 |
0 |
44 |
|
Mycoplasma_pulmonis |
705 |
0 |
40 |
|
Mycoplasma_synoviae_53 |
624 |
0 |
27 |
|
Neisseria_gonorrhoeae_FA_1090 |
1672 |
0 |
73 |
|
Neisseria_meningitidis_MC58 |
1744 |
0 |
76 |
|
Neisseria_meningitidis_Z2491 |
1729 |
0 |
48 |
|
Nitrosomonas_europaea |
2270 |
0 |
47 |
|
Nocardia_farcinica_IFM10152 |
5425 |
0 |
105 |
|
Nostoc_sp |
5258 |
0 |
126 |
|
Oceanobacillus_iheyensis |
3119 |
0 |
223 |
|
Onion_yellows_phytoplasma |
680 |
0 |
59 |
|
Parachlamydia_sp_UWE25 |
1675 |
1 |
51 |
|
Pasteurella_multocida |
1902 |
0 |
40 |
|
Photobacterium_profundum_SS9 |
5079 |
0 |
125 |
|
Photorhabdus_luminescens |
4126 |
0 |
71 |
|
Pirellula_sp |
5394 |
0 |
363 |
|
Porphyromonas_gingivalis_W83 |
1680 |
0 |
40 |
|
Prochlorococcus_marinus_CCMP1375 |
1492 |
0 |
37 |
|
Prochlorococcus_marinus_MED4 |
1450 |
0 |
49 |
|
Prochlorococcus_marinus_MIT9313 |
1946 |
0 |
72 |
|
Prochlorococcus_marinus_NATL2A |
1516 |
0 |
49 |
|
Propionibacterium_acnes_KPA171202 |
2102 |
0 |
63 |
|
Pseudomonas_aeruginosa |
5248 |
0 |
68 |
|
Pseudomonas_fluorescens_Pf-5 |
5736 |
0 |
55 |
|
Pseudomonas_putida_KT2440 |
4906 |
0 |
74 |
|
Pseudomonas_syringae |
5045 |
0 |
74 |
|
Pseudomonas_syringae_phaseolicola_1448A |
4732 |
0 |
76 |
|
Pseudomonas_syringae_pv_B728a |
4748 |
0 |
68 |
|
Psychrobacter_arcticum_273-4 |
1974 |
0 |
57 |
|
Ralstonia_solanacearum |
4633 |
0 |
84 |
|
Rhodopseudomonas_palustris_CGA009 |
4462 |
0 |
82 |
|
Rickettsia_conorii |
991 |
1 |
35 |
|
Rickettsia_felis_URRWXCal2 |
1306 |
0 |
48 |
|
Rickettsia_prowazekii |
772 |
1 |
31 |
|
Rickettsia_typhi_wilmington |
756 |
1 |
28 |
|
Salmonella_enterica_Choleraesuis |
4077 |
0 |
90 |
|
Salmonella_enterica_Paratypi_ATCC_9150 |
3657 |
0 |
55 |
|
Salmonella_typhi |
4196 |
0 |
82 |
|
Salmonella_typhi_Ty2 |
3848 |
0 |
59 |
|
Salmonella_typhimurium_LT2 |
4094 |
0 |
61 |
|
Shewanella_oneidensis |
3956 |
0 |
130 |
|
Shigella_flexneri_2a |
3974 |
0 |
213 |
|
Shigella_flexneri_2a_2457T |
3611 |
0 |
157 |
|
Silicibacter_pomeroyi_DSS-3 |
4018 |
0 |
95 |
|
Sinorhizobium_meliloti |
5674 |
0 |
112 |
|
Staphylococcus_aureus_aureus_MRSA252 |
2299 |
0 |
64 |
|
Staphylococcus_aureus_aureus_MSSA476 |
2264 |
0 |
58 |
|
Staphylococcus_aureus_COL |
2251 |
0 |
58 |
|
Staphylococcus_aureus_Mu50 |
2383 |
0 |
82 |
|
Staphylococcus_aureus_MW2 |
2286 |
0 |
60 |
|
Staphylococcus_aureus_N315 |
2314 |
0 |
72 |
|
Staphylococcus_epidermidis_ATCC_12228 |
2065 |
0 |
76 |
|
Staphylococcus_epidermidis_RP62A |
2081 |
0 |
78 |
|
Staphylococcus_haemolyticus |
2256 |
0 |
87 |
|
Streptococcus_agalactiae_2603 |
1831 |
0 |
55 |
|
Streptococcus_agalactiae_NEM316 |
1887 |
0 |
43 |
|
Streptococcus_mutans |
1690 |
0 |
48 |
|
Streptococcus_pneumoniae_R6 |
1723 |
0 |
60 |
|
Streptococcus_pneumoniae_TIGR4 |
1701 |
0 |
53 |
|
Streptococcus_pyogenes_M1_GAS |
1509 |
0 |
46 |
|
Streptococcus_pyogenes_MGAS10394 |
1582 |
0 |
59 |
|
Streptococcus_pyogenes_MGAS315 |
1596 |
1 |
47 |
|
Streptococcus_pyogenes_MGAS5005 |
1545 |
0 |
48 |
|
Streptococcus_pyogenes_MGAS6180 |
1576 |
0 |
50 |
|
Streptococcus_pyogenes_MGAS8232 |
1584 |
0 |
62 |
|
Streptococcus_pyogenes_SSI-1 |
1573 |
1 |
52 |
|
Streptococcus_thermophilus_CNRZ1066 |
1554 |
0 |
66 |
|
Streptococcus_thermophilus_LMG_18311 |
1541 |
0 |
70 |
|
Streptomyces_avermitilis |
7118 |
0 |
211 |
|
Streptomyces_coelicolor |
7517 |
0 |
206 |
|
Symbiobacterium_thermophilum_IAM14863 |
3023 |
0 |
99 |
|
Synechococcus_elongatus_PCC_6301 |
2334 |
0 |
42 |
|
Synechococcus_sp_WH8102 |
2156 |
0 |
58 |
|
Synechocystis_PCC6803 |
2907 |
0 |
60 |
|
Thermoanaerobacter_tengcongensis |
2262 |
0 |
52 |
|
Thermobifida_fusca_YX |
2915 |
0 |
169 |
|
Thermosynechococcus_elongatus |
2204 |
0 |
82 |
|
Thermotoga_maritima |
1695 |
0 |
44 |
|
Thermus_thermophilus_HB27 |
2034 |
0 |
43 |
|
Thermus_thermophilus_HB8 |
2036 |
0 |
42 |
|
Treponema_denticola_ATCC_35405 |
2331 |
0 |
38 |
|
Treponema_pallidum |
919 |
0 |
57 |
|
Tropheryma_whipplei_TW08_27 |
729 |
0 |
30 |
|
Tropheryma_whipplei_Twist |
734 |
0 |
32 |
|
Ureaplasma_urealyticum |
558 |
0 |
26 |
|
Vibrio_cholerae |
3237 |
0 |
59 |
|
Vibrio_fischeri_ES114 |
3499 |
0 |
66 |
|
Vibrio_parahaemolyticus |
4161 |
0 |
92 |
|
Vibrio_vulnificus_CMCP6 |
4080 |
0 |
86 |
|
Vibrio_vulnificus_YJ016 |
4232 |
0 |
83 |
|
Wigglesworthia_brevipalpis |
581 |
0 |
115 |
|
Wolbachia_endosymbiont_of_Brugia_malayi_TRS |
674 |
0 |
29 |
|
Wolbachia_endosymbiont_of_Drosophila_melanogaster
|
967 |
0 |
38 |
|
Wolinella_succinogenes |
1900 |
0 |
19 |
|
Xanthomonas_campestris |
3862 |
0 |
111 |
|
Xanthomonas_campestris_8004 |
3921 |
0 |
109 |
|
Xanthomonas_citri |
4103 |
0 |
137 |
|
Xanthomonas_oryzae_KACC10331 |
4145 |
0 |
413 |
|
Xylella_fastidiosa |
2079 |
0 |
70 |
|
Xylella_fastidiosa_Temecula1 |
1841 |
0 |
51 |
|
Yersinia_pestis_biovar_Mediaevails |
3635 |
0 |
101 |
|
Yersinia_pestis_CO92 |
3658 |
0 |
58 |
|
Yersinia_pestis_KIM |
3560 |
0 |
106 |
|
Yersinia_pseudotuberculosis_IP32953 |
3667 |
0 |
56 |
|
Zymomonas_mobilis_ZM4 |
1634 |
0 |
37 |