| PDB-ID | Compound |
| 1TPT_ | Thymidine phosphorylase |
| 2AT2A | Aspartate transcarbamoylase (aspartate carbamoyltransferase) |
| 1DEG_ | Calmodulin mutant with glu 84 deleted (del e84) |
| 1SKYE | f1-atpase |
| 4RNPA | RNA polymerase |
| 1CMYB | Hemoglobin ypsilanti (carbon monoxy form) |
| 3R1RA | ribonucleotide reductase r1 protein |
| 2LDB_ | L-Lactate dehydrogenase complex with NAD and fructose-1,6-bisphosphate |
| 1GYLA | Glycolate oxidase mutant with tyr 24 replaced by phe (y24f) |
| 1FPKA | fructose-1,6-bisphosphatase |
| 1ASYA | Aspartyl trna synthetase (asprs) complexed with transfer ribonucleic acid (trna==asp==) |
| 1AGNA | human sigma alcohol dehydrogenase |
| 1CRKA | creatine kinase |
| 1RPT_ | Prostatic acid phosphatase complexed with vanadate |
| 2BPA1 | Bacteriophage phix174 capsid proteins gpf, gpg, gpj and four nucleotides |
| 1NOM_ | DNA polymerase beta |
| 1TAHA | Lipase (triacylglycerol hydrolase) |
| 2UCZ_ | ubiquitin conjugating enzyme |
| 1FZAB | fibrinogen |
| 1FZAA | fibrinogen |
| 1GUKA | glutathione s-transferase a4-4 |
| 1CMKE | Camp-dependent protein kinase catalytic subunit |
| 1HWHA | growth hormone |
| 2BCT_ | beta-catenin |
| 1BCFA | Bacterioferritin (cytochrome b1) |
| 1RUSA | Rubisco (ribulose-1,5-bisphosphate carboxylase/oxygenase) complex with 3-phosphoglycerate |
| 1SERA | Seryl-trna synthetase complexed with trna-ser 2 (gga anticodon) |
| 1PKN_ | Pyruvate kinase complexed with manganese, potassium, and pyruvate |
| 1STD_ | Scytalone dehydratase |
| 1PYSA | phenylalanyl-trna synthetase |
| 1FRVB | hydrogenase |
| 1BMFG | bovine mitochondrial f1-atpase |
| 1SQC_ | squalene-hopene cyclase |
| 1AVOB | 11s regulator |
| 2LGSA | Glutamine synthetase complexed with glutamate |
| 1FGJA | hydroxylamine oxidoreductase |
| 1DKGB | nucleotide exchange factor grpe |
| 1ASX_ | thermosome |
| 1RGS_ | camp dependent protein kinase |
| 1AGRE | guanine nucleotide-binding protein g(i) |
| 2VAOA | vanillyl-alcohol oxidase |
| 1BCMB | bacteriophage mu transposase |
| 1FOKA | foki restriction endonuclease |
| 1HLOA | transcription factor max |
| 1PREA | proaerolysin |
| 1DLHA | Hla-dr1 (dra, drb1 0101) human class ii histocompatibility protein (extracellular domain) complexed with antigenic peptide |
| 1PIOA | beta-lactamase |
| 1GIN_ | adenylosuccinate synthetase |
| 1QAPA | quinolinic acid phosphoribosyltransferase |
| 1SLY_ | 70-kda soluble lytic transglycosylase |
| 2DMR_ | dmso reductase |
| 1BTMA | triosephosphate isomerase |
| 1BIB_ | Bira bifunctional protein (acts as biotin operon repressor and biotin holoenzyme synthetase) complex with biotinylated lysine |
| 1YSC_ | Serine carboxypeptidase (cpy, cpd-y, or proteinase c) |
| 1ATIB | glycyl-trna synthetase |
| 1IBCB | interleukin-1beta converting enzyme |
| 1ANV_ | adenovirus single-stranded DNA-binding protein |
| 1OFGA | glucose-fructose oxidoreductase |
| 1ZID_ | enoyl-[acyl-carrier-protein] reductase |
| 1LXTA | phosphoglucomutase (dephospho form) |
| 1ECRA | replication terminator protein |
| 3PBGA | 6-phospho-beta-d-galactosidase |
| 1CD1A | cd1 |
| 1AHJA | nitrile hydratase |
| 1AHJB | nitrile hydratase |
| 1JKW_ | cyclin h |
| 1AB8A | adenylyl cyclase |
| 1SIG_ | RNA polymerase primary sigma factor |
| 1DIV_ | ribosomal protein l9 |
| 1LRV_ | leucine-rich repeat variant |
| 1FDZA | n-acetylneuraminate lyase |
| 1PS1A | pentalenene synthase |
| 1CBY_ | delta-endotoxin cytb |
| 1LXA_ | udp n-acetylglucosamine o-acyltransferase |
| 1BVP1 | Bluetongue virus 10 (usa) vp7 (btv-10 (usa) vp7) |
| 1LNH_ | lipoxygenase-3 |
| 1LL1_ | metcyanin ii |
| 1AI6A | penicillin amidohydrolase |
| 1FCDA | Flavocytochrome c sulfide dehydrogenase (fcsd) |
| 1WSYB | Tryptophan synthase |
| 1PDNC | prd paired domain |
| 1HJP_ | ruva |
| 1CKNA | mrna capping enzyme |
| 1HTMB | Hemagglutinin ectodomain (soluble fragment, tbha2) |
| 1IPSA | isopenicillin n synthase |
| 1XBRB | t protein |
| 1AUA_ | phosphatidylinositol transfer protein sec14p |
| 1GTRA | Glutaminyl-trna synthetase complexed with trna and atp (-8 degrees c) |
| 1DUBB | 2-enoyl-coa hydratase |
| 1AIHA | hp1 integrase |
| 1AN9A | d-amino acid oxidase |
| 1IHFA | integration host factor |
| 1POIA | glutaconate coenzyme a-transferase |
| 1AURA | carboxylesterase |
| 1KNYA | kanamycin nucleotidyltransferase |
| 1FUIA | l-fucose isomerase |
| 1HJRA | Holliday junction resolvase (ruvc) |
| 1HLB_ | Hemoglobin (sea cucumber) |
| 1PYAB | Pyruvoyl-dependent histidine decarboxylase (l-histidine carboxylase) |
| 1LPBA | Lipase complexed with colipase and inhibited by undecane phosphonate methyl ester (two conformations) |
| 1TC3C | DNA |
| 1TDX_ | diphtheria tox repressor |
| 1BP1_ | bactericidalPERMEABILITY-INCREASING PROTEIN |
| 1AFRA | delta9 stearoyl-acyl carrier protein desaturase |
| 1HULA | interleukin-5 |
| 1RNL_ | nitrateNITRITE RESPONSE REGULATOR PROTEIN NARL |
| 1UBY_ | farnesyl diphosphate synthase |
| 1CNT2 | ciliary neurotrophic factor |
| 1PYDA | Pyruvate decarboxylase (pdc) |
| 1BNCB | biotin carboxylase |
| 1CHKA | chitosanase |
| 1YTW_ | yersinia protein tyrosine phosphatase |
| 1ECEA | endocellulase e1 |
| 2LIV_ | Leucine/Isoleucine/Valine-binding protein (LIVBP) |
| 1NBBA | cytochrome c' |
| 3MDDA | Medium chain acyl-coa dehydrogenase (mcad) |
| 1PAX_ | poly(adp-ribose) polymerase |
| 1FKX_ | adenosine deaminase |
| 4AAHA | methanol dehydrogenase |
| 1AK4C | cyclophilin a |
| 1DJXA | phosphoinositide-specific phospholipase c, isozyme delta1 |
| 1AK5_ | inosine-5'-monophosphate dehydrogenase |
| 1AQT_ | atp synthase |
| 2MASA | inosine-uridine nucleoside n-ribohydrolase |
| 1GTQA | 6-pyruvoyl tetrahydropterin synthase |
| 1GGGA | glutamine binding protein |
| 1AR0B | nuclear transport factor 2 |
| 1INP_ | Inositol polyphosphate 1-phosphatase (1-ptase) (inositol-1,4-bisphosphate 1-phosphatase) complexed with magnesium |
| 1JSUC | cyclin-dependent kinase-2 |
| 4PGMB | phosphoglycerate mutase 1 |
| 1OPR_ | orotate phosphoribosyltransferase |
| 1AORA | Aldehyde ferredoxin oxidoreductase protein complexed with molybdopterin (synchrotron x-ray diffraction) |
| 1DHR_ | Dihydropteridine reductase (dhpr) complex with nadh |
| 1MNMC | mcm1 transcriptional regulator |
| 1IGNA | rap1 |
| 1FT1A | protein farnesyltransferase |
| 1FT1B | protein farnesyltransferase |
| 1QUF_ | ferredoxin-nadp+ reductase |
| 1MHLC | myeloperoxidase |
| 1NOYA | DNA polymerase |
| 1BEO_ | beta-cryptogein |
| 1SMTB | transcriptional repressor smtb |
| 1AIJS | photosynthetic reaction center |
| 1AA0_ | fibritin |
| 1GRJ_ | Grea transcript cleavage factor from escherichia coli |
| 1GCB_ | gal6 hg (emts) derivative |
| 1YCSB | p53 |
| 1ETPA | cytochrome c4 |
| 1NSGB | fk506-binding protein |
| 1ECMB | endo-oxabicyclic transition state analogue |
| 1DRU_ | dihydrodipicolinate reductase |
| 1MAZ_ | bcl-xl |
| 2BGU_ | beta-glucosyltransferase |
| 1BHMB | endonuclease bamhi |
| 1KTE_ | thioltransferase |
| 1DELB | deoxynucleoside monophosphate kinase |
| 1HTP_ | H-protein complexed with lipoic acid charged in methylamine |
| 2PHLA | Phaseolin |
| 1GNWA | glutathione s-transferase |
| 1GTMA | glutamate dehydrogenase |
| 1GPMB | gmp synthetase |
| 1DHS_ | deoxyhypusine synthase |
| 1LPN_ | Lipase (triacylglycerol lipase) complexed with dodecanesulfonate |
| 5EAU_ | 5-epi-aristolochene synthase |
| 1AWCB | ga binding protein alpha |
| 1CFR_ | restriction endonuclease |
| 1THTB | Thioesterase |
| 1A4SA | betaine aldehyde dehydrogenase |
| 1ACC_ | anthrax protective antigen |
| 1P38_ | map kinase p38 |
| 1PEA_ | amidase operon |
| 1VNC_ | vanadium-containing chloroperoxidase |
| 1IRK_ | Insulin receptor (tyrosine kinase domain) mutant with cys 981 replaced by ser and tyr 984 replaced by phe (c981s, y984f) |
| 1RYT_ | rubrerythrin |
| 1PTA_ | phosphotriesterase |
| 2TCT_ | tetracycline repressor |
| 1OTGA | 5-carboxymethyl-2-hydroxymuconate isomerase |
| 2DKB_ | 2,2-dialkylglycine decarboxylase (pyruvate) (dgd) |
| 1RLAA | arginase |
| 1FJMA | protein serineTHREONINE PHOSPHATASE-1 (alpha isoform, type 1) |
| 1VHRA | human vh1-related dual-specificity phosphatase vhr |
| 1DEAA | glucosamine 6-phosphate deaminase |
| 1EFVA | electron transfer flavoprotein |
| 1EFVB | electron transfer flavoprotein |
| 1SMNA | extracellular endonuclease |
| 2HHMA | Human inositol monophosphatase dimer complex with gadolinium and sulfate |
| 1ESC_ | esterase |
| 1TFR_ | t4 rnase h |
| 1A0B_ | aerobic respiration control sensor protein arcb |
| 1BROA | bromoperoxidase a2 |
| 1VDFA | cartilage oligomeric matrix protein |
| 3MINB | nitrogenase molybdenum iron protein |
| 3MINA | nitrogenase molybdenum iron protein |
| 1AIKC | hiv-1 gp41 glycoprotein |
| 1VIN_ | cyclin a |
| 1FMTB | methionyl-trna fmet formyltransferase |
| 2LBD_ | retinoic acid receptor gamma |
| 1GOTB | gt-alphaGI-ALPHA CHIMERA |
| 1GOTG | gt-alphaGI-ALPHA CHIMERA |
| 1CSN_ | casein kinase-1 |
| 1DPGA | glucose 6-phosphate dehydrogenase |
| 1MSC_ | Bacteriophage ms2 unassembled coat protein dimer (translational repressor, assembly-defective) mutant with trp 82 replaced by arg (w82r) |
| 1ECPA | purine nucleoside phosphorylase |
| 1BV1_ | bet v 1 |
| 1TAFA | tfiid tbp associated factor 42 |
| 1TAFB | tfiid tbp associated factor 42 |
| 2PGD_ | 6-phosphogluconate dehydrogenase (6-pgdh) |
| 2PTD_ | phosphatidylinositol-specific phospholipase c |
| 1FJLB | paired protein |
| 1SRA_ | sparc |
| 1WDCA | scallop myosin |
| 1DKZA | substrate binding domain of dnak |
| 1R69_ | 434 repressor (amino-terminal domain) (r1-69) |
| 1POC_ | Phospholipase a2 complex with the transition-state analogue |
| 1GSA_ | glutathione synthetase |
| 1LKI_ | Leukemia inhibitory factor (lif) |
| 5CSMA | chorismate mutase |
| 1LCT_ | Lactoferrin (n-terminal half-molecule) |
| 2SCPA | Sarcoplasmic calcium-binding protein |
| 1ALO_ | aldehyde oxidoreductase |
| 1NSYA | nad synthetase |
| 1PII_ | N-(5'phosphoribosyl)anthranilate isomerase complex with indole-3-glycerol-phosphate synthase |
| 1AQ0A | 1,3-1,4-beta-glucanase |
| 1APYB | aspartylglucosaminidase |
| 1DORA | dihydroorotate dehydrogenase a |
| 1FWCA | urease |
| 2HPDA | Cytochrome p450 (bm-3) (hemoprotein domain) (fatty acid monooxygenase) |
| 1OBPA | odorant-binding protein |
| 1AA2_ | beta-spectrin |
| 1TRKA | Transketolase |
| 1AQ6A | l-2-haloacid dehalogenase |
| 1FURB | fumarase c |
| 1FUA_ | l-fuculose-1-phosphate aldolase |
| 1RSS_ | ribosomal protein s7 |
| 1HSBA | Class i histocompatibility antigen aw68.1 (leucocyte antigen) |
| 1ECL_ | escherichia coli topoisomerase i |
| 1MLDA | Malate dehydrogenase |
| 1CLC_ | endoglucanase celd |
| 1ESFA | staphylococcal enterotoxin a |
| 1OTFA | 4-oxalocrotonate tautomerase |
| 1YASA | hydroxynitrile lyase |
| 1EDT_ | Endo-beta-n-acetylglucosaminidase h, endo h |
| 1OPY_ | delta5-3-ketosteroid iosmerase |
| 1DXY_ | d-2-hydroxyisocaproate dehydrogenase |
| 1JDW_ | l-arginine |
| 1AK1_ | ferrochelatase |
| 1CEO_ | cellulase celc |
| 2CHSA | Chorismate mutase |
| 2KINA | kinesin |
| 2KINB | kinesin |
| 1SFTA | alanine racemase |
| 1BGP_ | barley grain peroxidase |
| 1PNKB | penicillin amidohydrolase |
| 1GPB_ | Glycogen phosphorylase b (t state) |
| 3BCL_ | Bacteriochlorophyll-a protein |
| 1LIS_ | Lysin |
| 1ISO_ | isocitrate dehydrogenase |
| 2FHA_ | ferritin |
| 1AIL_ | nonstructural protein ns1 |
| 1KVU_ | udp-galactose 4-epimerase |
| 1HGXB | hypoxanthine-guanine-xanthine phosphoribosyltransferase |
| 2TYSA | tryptophan synthase |
| 1GIFA | glycosylation-inhibiting factor |
| 1EDE_ | Haloalkane dehalogenase at ph 8.2 |
| 1ADOA | aldolase |
| 1ONRA | transaldolase b |
| 1LML_ | leishmanolysin |
| 1VLS_ | aspartate receptor |
| 1PUD_ | trna-guanine transglycosylase |
| 2ABK_ | endonuclease iii |
| 1MUCA | muconate lactonizing enzyme |
| 1QBA_ | chitobiase |
| 2HTS_ | Heat shock transcription factor (DNA binding domain) |
| 1GND_ | guanine nucleotide dissociation inhibitor |
| 1UCH_ | ubiquitin c-terminal hydrolase uch-l3 |
| 1NFN_ | apolipoprotein e3 |
| 1AK0_ | p1 nuclease |
| 1AH6_ | heat shock protein 90 |
| 1UXY_ | uridine diphospho-n-acetylenolpyruvylglucosamine reductase |
| 1YTBA | Tata-box binding protein (ytbp) complexed with DNA containing tata-box |
| 1POT_ | spermidinePUTRESCINE-BINDING PROTEIN |
| 1MML_ | mmlv reverse transcriptase |
| 1QNF_ | photolyase |
| 1NPK_ | Nucleoside diphosphate kinase |
| 1AYL_ | phosphoenolpyruvate carboxykinase |
| 1MPGA | 3-methyladenine DNA glycosylase ii |
| 1NULA | xanthine-guanine phosphoribosyltransferase |
| 1LMB4 | Lambda repressorOPERATOR COMPLEX |
| 1IIBA | enzyme iib of the cellobiose-specific phosphotransferase system |
| 1AFWA | 3-ketoacetyl-coa thiolase |
| 1UAE_ | udp-n-acetylglucosamine enolpyruvyl transferase |
| 1TML_ | Endo-1,4-beta-d-glucanase |
| 1UNKA | colicin e7 |
| 1GDOB | glucosamine 6-phosphate synthase |
| 1AL3_ | cys regulon transcriptional activator cysb |
| 1AOQA | nitrite reductase |
| 1GUQB | galactose-1-phosphate uridylyltransferase |
| 1KVEA | smk toxin |
| 1LBU_ | muramoyl-pentapeptide carboxypeptidase |
| 1AMP_ | Aminopeptidase (aeromonas proteolytica) |
| 1ATLA | atrolysin c |
| 1NAR_ | Narbonin |
| 3COX_ | Cholesterol oxidase |
| 1CYDA | carbonyl reductase |
| 2NACA | Nad-dependent formate dehydrogenase (apo form) |
| 1AXN_ | annexin iii |
| 1MZM_ | maize nonspecific lipid transfer protein |
| 2VHBA | hemoglobin |
| 1PDA_ | Porphobilinogen deaminase |
| 1XGSA | methionine aminopeptidase |
| 6GSVA | mu class glutathione s-transferase of isoenzyme 3-3 |
| 1KPTA | kp4 toxin |
| 3CLA_ | Type III chloramphenicol acetyltransferase (CAT=III=) complex with chloramphenicol |
| 1PCFA | transcriptional coactivator pc4 |
| 1AM3_ | hiv capsid |
| 1BGC_ | Granulocyte colony-stimulating factor (rbg-csf) |
| 1TADA | Transducin-alpha (gt-alpha-gdp-alf, t-alpha-gdp-alf) complexed with gdp and aluminum fluoride |
| 1TFE_ | elongation factor ts |
| 1XIKB | protein r2 of ribonucleotide reductase |
| 1KAZ_ | 70kd heat shock cognate protein |
| 2CYP_ | Cytochrome c peroxidase (ferrocytochrome c (colon) h2O2 reductase) |
| 1VJS_ | alpha-amylase |
| 4PGAA | glutaminase-asparaginase |
| 1FVKA | disulfide bond formation protein |
| 1VHH_ | sonic hedgehog |
| 1PDO_ | mannose permease |
| 1AGJA | epidermolytic toxin a |
| 1PMI_ | phosphomannose isomerase |
| 1MTYD | methane monooxygenase hydroxylase |
| 1MTYB | methane monooxygenase hydroxylase |
| 1MTYG | methane monooxygenase hydroxylase |
| 1KID_ | groel (hsp60 class) |
| 1SBP_ | Sulfate-binding protein |
| 1FDS_ | 17-beta-hydroxysteroid-dehydrogenase |
| 1LT5D | heat-labile enterotoxin |
| 1AKO_ | exonuclease iii |
| 2GDM_ | leghemoglobin (oxy) |
| 1VSD_ | integrase |
| 1GAI_ | glucoamylase-471 |
| 2CCYA | Cytochrome c' |
| 1ANF_ | maltodextrin-binding protein |
| 2HMZA | Hemerythrin (adizomet) |
| 1YVEI | acetohydroxy acid isomeroreductase |
| 119L_ | Lysozyme mutant with cys 54 replaced by thr, cys 97 replaced by ala, ala 134 replaced by ser (c54t,C97a, a134s) |
| 1CEM_ | cellulase cela (1,4-beta-d-glucan-glucanohydrolase) |
| 1EDG_ | endoglucanase a |
| 1PHC_ | Cytochrome p450-cam (camphor 5-monoxygenase) |
| 1DAD_ | dethiobiotin synthetase |
| 1AOP_ | sulfite reductase hemoprotein |
| 1MRP_ | ferric iron binding protein |
| 1ARV_ | peroxidase |
| 3CYR_ | cytochrome c3 |
| 1MRJ_ | Alpha-trichosanthin complexed with adenine |
| 1ZIN_ | adenylate kinase |
| 1LAM_ | leucine aminopeptidase |
| 1KUH_ | zinc protease |
| 1CSH_ | Citrate synthase complexed with oxaloacetate and amidocarboxymethyldethia coenzyme a |
| 2ILK_ | interleukin-10 |
| 3PTE_ | D-alanyl-d-alanine carboxypeptidaseTRANSPEPTIDASE |
| 1NOX_ | nadh oxidase |
| 1AKZ_ | uracil-DNA glycosylase |
| 1AVMA | superoxide dismutase |
| 1TCA_ | Lipase (triacylglycerol hydrolase) |
| 3GRS_ | Glutathione reductase , oxidized form (e) |
| 1KPF_ | protein kinase c interacting protein |
| 1AH7_ | phospholipase c |
| 5ICB_ | calbindin d9k |
| 1AIE_ | p53 |
| 1LUCB | bacterial luciferase |
| 2ARCB | arabinose operon regulatory protein |
| 1POA_ | Phospholipase a2 |
| 2HBG_ | Hemoglobin (deoxy) |
| 8ABP_ | L-Arabinose-binding protein (mutant with met 108 replaced by leu) (M108L) complex with d-Galactose |
| 2RN2_ | Ribonuclease h |
| 2END_ | Endonuclease v |
| 1RPO_ | Rop (cole1 repressor of primer) mutant with ala inserted on either side of asp 31 (ins (a-d31-a)) |
| 1MBD_ | Myoglobin (deoxy, pH 8.4) |
| 1ECA_ | Hemoglobin (erythrocruorin, aquo met) |
| 1XYZA | 1,4-beta-d-xylan-xylanohydrolase |
| 256BA | Cytochrome b562 (oxidized) |
| 2CTC_ | Carboxypeptidase a complex with l-phenyl lactate (l-o-phe) |
| 3SDHA | Hemoglobin i (homodimer) (carbon-monoxy) |
| 1PPT_ | Avian pancreatic polypeptide |
| 1UTG_ | Uteroglobin (oxidized) |
| 1JHGA | trp operon repressor |
| 1JETA | oligo-peptide binding protein |
| 2PTH_ | peptidyl-trna hydrolase |
| 1CSEI | Subtilisin carlsberg (commercial product from serra, heidelberg called subtilisin nagarse) complex with eglin-c |
| 1CSEE | Subtilisin carlsberg (commercial product from serra, heidelberg called subtilisin nagarse) complex with eglin-c |
| 1IFC_ | Intestinal fatty acid binding protein (apo form 2) |
| 1RGEA | ribonuclease |
| 1CTJ_ | cytochrome c6 |
| 2ERL_ | mating pheromone er-1 |
| 1CEX_ | cutinase |
| 1IXH_ | phosphate-binding protein |
| 3LZT_ | lysozyme |
| 1CBN_ | Crambin |